Basic Information
Locus ID:
gene-QYE76_062079
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 83765720 | 83774856 | + | gene-QYE76_062079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 99,523.78 Da | 53.86 | 94.32 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 611 | 729 | 1.37563E-56 | - |
| CDD | cd00303 | retropepsin_like | 243 | 340 | 5.74945E-13 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 580 | 678 | 4.6E-34 | IPR041577 |
| SUPERFAMILY | SSF50630 | Acid proteases | 239 | 348 | 9.72E-6 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 482 | 712 | 3.11E-70 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 449 | 528 | 2.3E-7 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 529 | 619 | 1.1E-27 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 224 | 364 | 3.3E-18 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HBV9 | DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12579 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |