Basic Information
Locus ID:
gene-QYE76_060830
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
SART-1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 46551743 | 46561897 | + | gene-QYE76_060830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 157,588.19 Da | 40.35 | 88.55 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 741 | 1004 | 1.22177E-53 | - |
| Pfam | PF00005 | ABC transporter | 530 | 575 | 9.7E-10 | IPR003439 |
| Pfam | PF03343 | SART-1 family | 136 | 182 | 2.8E-20 | IPR005011 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 747 | 1003 | 4.6E-37 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1247 | 1328 | 2.4E-18 | IPR026960 |
| Pfam | PF04535 | Domain of unknown function (DUF588) | 313 | 445 | 1.0E-25 | IPR006702 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 801 | 1020 | 4.67E-6 | IPR043502 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 521 | 586 | 1.02E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 529 | 591 | 5.7E-13 | IPR027417 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 728 | 1004 | 19.207113 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 136 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16780.1 | SART-1 family. Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes. | 0 |
| RefSeq | XP_051213610.1 | uncharacterized protein LOC127331471 [Lolium perenne] | 0 |
| F2E5T1 | CASP-like protein 4B3 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0UJC6 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG109627 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology