halophFGD

Basic Information

Locus ID: gene-QYE76_060788

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	45003885	45010711	-	gene-QYE76_060788

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.59	69,354.76 Da	31.73	73.16	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14223	gag-polypeptide of LTR copia-type	173	248	2.4E-6	-
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	444	557	9.8E-38	IPR013103
Pfam	PF00098	Zinc knuckle	307	323	6.3E-5	IPR001878
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	295	329	3.14E-7	IPR036875
SUPERFAMILY	SSF56672	DNA/RNA polymerases	444	542	3.29E-5	IPR043502
Gene3D	G3DSA:4.10.60.10	-	301	346	1.1E-5	-
SMART	SM00343	c2hcfinal6	307	323	0.0011	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	308	323	9.603271	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	246	301	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	379	400	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	255	269	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_020193194.1	uncharacterized protein LOC109779027 [Aegilops tauschii subsp. strangulata]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q8LN71	Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0091N21.45 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Casuarinaceae	Casuarina glauca	1	Cgl02G1953
Poaceae	Lolium multiflorum	59	gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... gene-QYE76_000818, gene-QYE76_001036, gene-QYE76_001587, gene-QYE76_001965, gene-QYE76_002171, gene-QYE76_002498, gene-QYE76_003753, gene-QYE76_004144, gene-QYE76_004452, gene-QYE76_007515, gene-QYE76_009620, gene-QYE76_009808, gene-QYE76_010372, gene-QYE76_011474, gene-QYE76_012386, gene-QYE76_012718, gene-QYE76_016361, gene-QYE76_016591, gene-QYE76_017228, gene-QYE76_022282, gene-QYE76_022694, gene-QYE76_023442, gene-QYE76_023583, gene-QYE76_024608, gene-QYE76_027537, gene-QYE76_028138, gene-QYE76_031171, gene-QYE76_031263, gene-QYE76_031911, gene-QYE76_032503, gene-QYE76_033169, gene-QYE76_033541, gene-QYE76_033861, gene-QYE76_034216, gene-QYE76_035076, gene-QYE76_036366, gene-QYE76_042151, gene-QYE76_043182, gene-QYE76_044293, gene-QYE76_052034, gene-QYE76_053577, gene-QYE76_053942, gene-QYE76_054068, gene-QYE76_055466, gene-QYE76_056540, gene-QYE76_057182, gene-QYE76_057238, gene-QYE76_057398, gene-QYE76_060767, gene-QYE76_060788, gene-QYE76_063325, gene-QYE76_063928, gene-QYE76_065623, gene-QYE76_066085, gene-QYE76_066268, gene-QYE76_066930