Basic Information
Locus ID:
gene-QYE76_060594
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 40845485 | 40846533 | + | gene-QYE76_060594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 27,678.59 Da | 44.85 | 80.28 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 92 | 174 | 7.13834E-16 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 92 | 173 | 1.6E-8 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 92 | 179 | 1.81E-13 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 83 | 203 | 6.9E-17 | IPR021109 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039838949.1 | uncharacterized protein LOC120699143 isoform X1 [Panicum virgatum] | 0 |
| TrEMBL | A0A2T7F6C5 | Peptidase A2 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G202200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |