Basic Information
Locus ID:
gene-QYE76_059514
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8452041 | 8461715 | + | gene-QYE76_059514 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 51,246.18 Da | 41.55 | 67.24 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 275 | 364 | 5.64533E-15 | - |
| Pfam | PF00098 | Zinc knuckle | 110 | 127 | 4.1E-6 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 103 | 132 | 1.38E-6 | IPR036875 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 252 | 381 | 6.8E-9 | IPR021109 |
| Gene3D | G3DSA:4.10.60.10 | - | 65 | 144 | 4.2E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 111 | 127 | 8.3E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 112 | 127 | 10.064789 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 164 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048556572.1 | uncharacterized protein LOC125537321 [Triticum urartu] | 0 |
| TrEMBL | A0A0D9XYF2 | Retrotrans_gag domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 33 | gene-QYE76_000029, gene-QYE76_000961, gene-QYE76_010060 ... |