Basic Information
Locus ID:
gene-QYE76_059364
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1556322 | 1559609 | - | gene-QYE76_059364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 81,248.57 Da | 52.71 | 74.26 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 545 | 638 | 1.15644E-17 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 126 | 216 | 2.5E-16 | IPR005162 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 547 | 637 | 1.3E-10 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 543 | 643 | 1.17E-15 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 530 | 666 | 3.3E-20 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 557 | 568 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051190174.1 | uncharacterized protein LOC127303488 [Lolium perenne] | 0 |
| TrEMBL | Q7XN29 | OSJNBa0021F22.2 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0021F22.2 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |