Basic Information
Locus ID:
gene-QYE76_058992
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 361433125 | 361450183 | - | gene-QYE76_058992 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 99,436.29 Da | 45.46 | 82.20 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 108 | 226 | 3.40894E-56 | - |
| CDD | cd00303 | retropepsin_like | 738 | 835 | 5.6068E-13 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 77 | 175 | 4.5E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 438 | 528 | 1.2E-8 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 52 | 209 | 2.22E-47 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 734 | 843 | 9.21E-6 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 719 | 857 | 3.4E-18 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 49 | 116 | 1.7E-13 | IPR043128 |
| Coils | Coil | Coil | 357 | 377 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A392MSS3 | Reverse transcriptase domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0011483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |