halophFGD

Basic Information

Locus ID: gene-QYE76_058568

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: gag-polypeptide of LTR copia-type

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	348441405	348445210	-	gene-QYE76_058568

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.92	81,695.19 Da	36.51	79.28	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00098	Zinc knuckle	443	459	2.2E-5	IPR001878
Pfam	PF14223	gag-polypeptide of LTR copia-type	275	396	3.0E-16	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	433	464	5.98E-8	IPR036875
Gene3D	G3DSA:4.10.60.10	-	410	471	3.2E-5	-
SMART	SM00343	c2hcfinal6	443	459	2.1E-4	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	444	459	9.932926	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	406	432	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	394	434	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	704	739	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	713	730	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048551923.1	uncharacterized protein LOC125531639 isoform X1 [Triticum urartu]	0
TrEMBL	Q2QQP6	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30310 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	64	gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ... gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046