Basic Information
Locus ID:
gene-QYE76_058321
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
structural constituent of ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 342000223 | 342000705 | - | gene-QYE76_058321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 17,563.07 Da | 17.91 | 95.69 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 80 | 151 | 2.3E-19 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 11 | 70 | 1.1E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 70 | 3.73E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 76 | 152 | 1.55E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 76 | 157 | 4.0E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 75 | 9.9E-21 | - |
| SMART | SM00213 | ubq_7 | 9 | 73 | 1.5E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 78 | 149 | 9.8E-18 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 9 | 70 | 13.293092 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 78 | 153 | 18.780491 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 130 | 151 | 5.7E-15 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 109 | 129 | 5.7E-15 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 88 | 108 | 5.7E-15 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_051222168.1 | uncharacterized protein LOC127340465 [Lolium perenne] | 0 |
| P62972 | Polyubiquitin (Fragment) OS=Xenopus laevis OX=8355 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6T9I2 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_058320, gene-QYE76_058321, gene-QYE76_058937 |