Basic Information
Locus ID:
gene-QYE76_057752
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 325840689 | 325841486 | - | gene-QYE76_057752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 28,884.04 Da | 48.90 | 79.81 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 196 | 242 | 5.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 248 | 4.42E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 251 | 9.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 241 | 5.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 242 | 12.681067 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12210.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020191376.1 | E3 ubiquitin-protein ligase SGR9, amyloplastic-like [Aegilops tauschii subsp. strangulata] | 0 |
| Q6DIP3 | E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6N307 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1925, CH02.2138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0535530, gene-QOZ80_6AG0535550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344770.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000907, gene-QYE76_009970, gene-QYE76_042560 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G015310 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g35100.1, LOC_Os01g35120.1, LOC_Os01g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G173700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0403599, Pt_Chr0403600, Pt_Chr0404536, Pt_Chr0404560 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G878300, Tel5E01G877500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG014990, gene_TRIDC4BG014250 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G521400.1.cds1, TraesCS3B02G139400.1.cds1 ... |