Basic Information
Locus ID:
gene-QYE76_057627
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 323022024 | 323023030 | + | gene-QYE76_057627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 12,883.19 Da | 55.35 | 62.15 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 38 | 83 | 3.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 38 | 88 | 2.83E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 97 | 2.9E-17 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 35 | 91 | 0.0026 | - |
| SMART | SM00184 | ring_2 | 39 | 82 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 83 | 13.359705 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051222015.1 | uncharacterized protein LOC127340285 [Lolium perenne] | 0 |
| Q9BWF2 | E3 ubiquitin-protein ligase TRAIP OS=Homo sapiens OX=9606 GN=TRAIP PE=1 SV=1 | 0 | |
| TrEMBL | I1HUV4 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=104583370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_057624, gene-QYE76_057627 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG063520, gene_TRIDC3BG071220 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G484400.1 |