Basic Information
Locus ID:
gene-QYE76_057622
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 322918127 | 322918846 | + | gene-QYE76_057622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 26,642.32 Da | 54.58 | 76.69 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 187 | 228 | 8.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 187 | 233 | 9.94E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 233 | 1.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 227 | 7.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 228 | 12.607302 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051222014.1 | uncharacterized protein LOC127340284 [Lolium perenne] | 0 |
| TrEMBL | A0A8I7B6B7 | RING-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH02.4409, BH02.4448, CH02.1430, CH02.4496, CH02.4497 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0312920.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016886, gene-QYE76_016887, gene-QYE76_057622 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G392400 |