Basic Information
Locus ID:
gene-QYE76_057611
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 322650084 | 322655627 | - | gene-QYE76_057611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 87,565.50 Da | 40.48 | 68.96 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 672 | 745 | 2.4E-14 | IPR001525 |
| Pfam | PF01426 | BAH domain | 229 | 349 | 4.2E-10 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 389 | 751 | 3.23E-33 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 651 | 738 | 3.0E-26 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 171 | 336 | 3.6E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 337 | 554 | 9.2E-62 | - |
| SMART | SM00439 | BAH_4 | 227 | 351 | 2.7E-17 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 227 | 351 | 15.888116 | IPR001025 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 79 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_047056253.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Lolium rigidum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology