Basic Information
Locus ID:
gene-QYE76_057276
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 312752404 | 312759128 | - | gene-QYE76_057276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 137,675.66 Da | 45.58 | 83.89 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 680 | 777 | 1.74629E-12 | - |
| Pfam | PF04195 | Putative gypsy type transposon | 107 | 149 | 3.1E-12 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 380 | 470 | 2.8E-8 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 677 | 785 | 4.33E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 947 | 1097 | 2.89E-25 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 938 | 1110 | 6.1E-21 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 661 | 799 | 8.1E-18 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 22 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021750881.1 | uncharacterized protein LOC110716562 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A2G9HSD1 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06869 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |