Basic Information
Locus ID:
gene-QYE76_057142
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 309334359 | 309340693 | - | gene-QYE76_057142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 165,242.55 Da | 39.54 | 106.67 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 283 | 568 | 8.73412E-92 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 598 | 804 | 5.05482E-98 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1210 | 1430 | 4.16044E-116 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 897 | 1187 | 1.32191E-72 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 625 | 756 | 2.1E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 284 | 547 | 1.6E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 910 | 1139 | 1.2E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1229 | 1377 | 4.8E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1204 | 1437 | 5.94E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 274 | 573 | 3.53E-28 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 898 | 1193 | 2.88E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 623 | 818 | 8.54E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 590 | 854 | 2.2E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1195 | 1448 | 1.0E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 868 | 1193 | 3.5E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 239 | 583 | 9.9E-43 | IPR036640 |
| SMART | SM00382 | AAA_5 | 630 | 804 | 2.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1238 | 1431 | 5.4E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 899 | 1175 | 34.812733 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1214 | 1446 | 16.620119 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 598 | 827 | 20.688393 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 283 | 560 | 29.36142 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 729 | 743 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_047055696.1 | putative ABC transporter C family member 15 [Lolium rigidum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FTS8 | ABC transporter C family member 15 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology