Basic Information
Locus ID:
gene-QYE76_056908
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 302300056 | 302302493 | + | gene-QYE76_056908 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 41,532.37 Da | 38.40 | 77.18 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 207 | 300 | 4.92647E-20 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 208 | 299 | 2.1E-11 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 71 | 144 | 8.4E-14 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 205 | 305 | 4.57E-17 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 190 | 328 | 1.7E-21 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 219 | 230 | - | IPR001969 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039838949.1 | uncharacterized protein LOC120699143 isoform X1 [Panicum virgatum] | 0 |
| TrEMBL | A0A2T7F6G9 | Peptidase A2 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G207500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |