Basic Information
Locus ID:
gene-QYE76_056610
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Uncharacterized protein K02A2.6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 292424088 | 292429992 | + | gene-QYE76_056610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 111,767.26 Da | 38.13 | 78.38 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 587 | 669 | 8.98371E-8 | - |
| CDD | cd01647 | RT_LTR | 670 | 831 | 3.93667E-76 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 896 | 970 | 2.7E-14 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 670 | 831 | 1.8E-21 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 670 | 968 | 9.78E-92 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 841 | 924 | 3.0E-21 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 678 | 743 | 3.4E-14 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 744 | 838 | 4.0E-27 | IPR043128 |
| Gene3D | G3DSA:3.10.20.370 | - | 925 | 981 | 3.2E-5 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 578 | 677 | 3.2E-6 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 292 | - | - |
| Coils | Coil | Coil | 30 | 67 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | Q7XMR7 | OSJNBa0029L02.20 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0029L02.20 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |