Basic Information
Locus ID:
gene-QYE76_056584
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 291492719 | 291504894 | - | gene-QYE76_056584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 157,441.95 Da | 43.56 | 83.96 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1222 | 1361 | 4.15641E-67 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 546 | 676 | 1.5E-15 | - |
| Pfam | PF08387 | FBD | 375 | 418 | 1.3E-7 | IPR006566 |
| Pfam | PF00646 | F-box domain | 74 | 118 | 2.8E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 25 | 67 | 3.5E-6 | IPR001810 |
| Pfam | PF00665 | Integrase core domain | 859 | 956 | 1.4E-9 | IPR001584 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 716 | 746 | 1.57E-7 | IPR036875 |
| SUPERFAMILY | SSF52047 | RNI-like | 162 | 368 | 3.37E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 72 | 114 | 1.44E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 65 | 1.83E-11 | IPR036047 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 859 | 1006 | 6.07E-33 | IPR012337 |
| Gene3D | G3DSA:4.10.60.10 | - | 694 | 758 | 6.3E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 161 | 517 | 1.4E-6 | IPR032675 |
| Gene3D | G3DSA:3.30.420.10 | - | 849 | 1015 | 2.5E-34 | IPR036397 |
| Gene3D | G3DSA:1.20.1280.50 | - | 74 | 115 | 8.1E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 65 | 5.6E-6 | - |
| SMART | SM00256 | fbox_2 | 78 | 118 | 6.4E-6 | IPR001810 |
| SMART | SM00343 | c2hcfinal6 | 726 | 742 | 0.0048 | IPR001878 |
| SMART | SM00256 | fbox_2 | 29 | 68 | 0.003 | IPR001810 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 842 | 1026 | 17.282207 | IPR001584 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 727 | 742 | 9.059338 | IPR001878 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 78 | 9.338503 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 72 | 108 | 10.080346 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1069 | 1109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 711 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02910.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_047064419.1 | uncharacterized protein LOC124672191, partial [Lolium rigidum] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XJV0 | Polyprotein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7937 |
| Amaranthaceae | Suaeda glauca | 21 | Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004270 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G04102, Ftri5G14832 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03974 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10413 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16920.v3.1 |