halophFGD

Basic Information

Locus ID: gene-QYE76_056533

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: gag-polypeptide of LTR copia-type

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	289981220	289987308	+	gene-QYE76_056533

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.50	41,994.43 Da	32.54	78.80	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09272	RNase_HI_RT_Ty1	1	80	9.16654E-31	-
Pfam	PF00098	Zinc knuckle	262	277	1.9E-4	IPR001878
Pfam	PF14223	gag-polypeptide of LTR copia-type	87	210	1.5E-14	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	251	281	2.97E-8	IPR036875
Gene3D	G3DSA:4.10.60.10	-	227	292	2.1E-7	-
SMART	SM00343	c2hcfinal6	261	277	0.0048	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	262	277	9.059338	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	230	253	-	-
Coils	Coil	Coil	191	211	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_047064419.1	uncharacterized protein LOC124672191, partial [Lolium rigidum]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	A0A453I8F0	CCHC-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	1	Ah030472
Poaceae	Lolium multiflorum	226	gene-QYE76_000514, gene-QYE76_000718, gene-QYE76_000828 ... gene-QYE76_001129, gene-QYE76_001152, gene-QYE76_001223, gene-QYE76_001719, gene-QYE76_001788, gene-QYE76_001791, gene-QYE76_001850, gene-QYE76_002411, gene-QYE76_002432, gene-QYE76_002454, gene-QYE76_002508, gene-QYE76_002670, gene-QYE76_002886, gene-QYE76_002983, gene-QYE76_003173, gene-QYE76_004378, gene-QYE76_004498, gene-QYE76_005272, gene-QYE76_006202, gene-QYE76_006241, gene-QYE76_006462, gene-QYE76_007173, gene-QYE76_007255, gene-QYE76_007957, gene-QYE76_008250, gene-QYE76_008423, gene-QYE76_009543, gene-QYE76_009581, gene-QYE76_009763, gene-QYE76_009928, gene-QYE76_010143, gene-QYE76_010296, gene-QYE76_010712, gene-QYE76_010806, gene-QYE76_011489, gene-QYE76_011492, gene-QYE76_011541, gene-QYE76_011777, gene-QYE76_012461, gene-QYE76_012816, gene-QYE76_013066, gene-QYE76_013196, gene-QYE76_013523, gene-QYE76_013801, gene-QYE76_014224, gene-QYE76_014594, gene-QYE76_014970, gene-QYE76_015294, gene-QYE76_015316, gene-QYE76_015600, gene-QYE76_016056, gene-QYE76_016273, gene-QYE76_016774, gene-QYE76_018505, gene-QYE76_018699, gene-QYE76_018718, gene-QYE76_020458, gene-QYE76_020650, gene-QYE76_020712, gene-QYE76_020741, gene-QYE76_020845, gene-QYE76_021159, gene-QYE76_021801, gene-QYE76_022513, gene-QYE76_022798, gene-QYE76_023323, gene-QYE76_023567, gene-QYE76_023588, gene-QYE76_023762, gene-QYE76_024034, gene-QYE76_024045, gene-QYE76_024294, gene-QYE76_024337, gene-QYE76_024434, gene-QYE76_024899, gene-QYE76_025857, gene-QYE76_025981, gene-QYE76_026395, gene-QYE76_027625, gene-QYE76_027719, gene-QYE76_027922, gene-QYE76_028070, gene-QYE76_028212, gene-QYE76_028368, gene-QYE76_028563, gene-QYE76_028750, gene-QYE76_028985, gene-QYE76_029340, gene-QYE76_029392, gene-QYE76_029895, gene-QYE76_030113, gene-QYE76_030121, gene-QYE76_030491, gene-QYE76_030554, gene-QYE76_030565, gene-QYE76_030634, gene-QYE76_030825, gene-QYE76_031097, gene-QYE76_031272, gene-QYE76_031438, gene-QYE76_031471, gene-QYE76_031806, gene-QYE76_032030, gene-QYE76_032653, gene-QYE76_032659, gene-QYE76_033195, gene-QYE76_033349, gene-QYE76_033495, gene-QYE76_033610, gene-QYE76_034473, gene-QYE76_034665, gene-QYE76_034814, gene-QYE76_034821, gene-QYE76_035131, gene-QYE76_036158, gene-QYE76_036184, gene-QYE76_036516, gene-QYE76_036638, gene-QYE76_037012, gene-QYE76_037115, gene-QYE76_038018, gene-QYE76_038691, gene-QYE76_038753, gene-QYE76_039133, gene-QYE76_039406, gene-QYE76_040074, gene-QYE76_040158, gene-QYE76_040380, gene-QYE76_040489, gene-QYE76_040713, gene-QYE76_041378, gene-QYE76_041414, gene-QYE76_042541, gene-QYE76_042822, gene-QYE76_043042, gene-QYE76_043678, gene-QYE76_043917, gene-QYE76_043991, gene-QYE76_044415, gene-QYE76_044541, gene-QYE76_044731, gene-QYE76_045117, gene-QYE76_045566, gene-QYE76_045626, gene-QYE76_045664, gene-QYE76_046476, gene-QYE76_047044, gene-QYE76_048415, gene-QYE76_048646, gene-QYE76_048650, gene-QYE76_048790, gene-QYE76_048849, gene-QYE76_048938, gene-QYE76_049312, gene-QYE76_049454, gene-QYE76_049474, gene-QYE76_049822, gene-QYE76_050166, gene-QYE76_050501, gene-QYE76_050685, gene-QYE76_051204, gene-QYE76_052329, gene-QYE76_052402, gene-QYE76_052658, gene-QYE76_052768, gene-QYE76_053616, gene-QYE76_053913, gene-QYE76_054060, gene-QYE76_054098, gene-QYE76_054111, gene-QYE76_054584, gene-QYE76_054660, gene-QYE76_054859, gene-QYE76_055088, gene-QYE76_055262, gene-QYE76_055761, gene-QYE76_056066, gene-QYE76_056272, gene-QYE76_056420, gene-QYE76_056421, gene-QYE76_056533, gene-QYE76_056894, gene-QYE76_057084, gene-QYE76_057830, gene-QYE76_058503, gene-QYE76_058665, gene-QYE76_058813, gene-QYE76_059118, gene-QYE76_059252, gene-QYE76_059610, gene-QYE76_059744, gene-QYE76_059788, gene-QYE76_060093, gene-QYE76_060124, gene-QYE76_060308, gene-QYE76_061093, gene-QYE76_062257, gene-QYE76_063491, gene-QYE76_063587, gene-QYE76_063864, gene-QYE76_063900, gene-QYE76_064545, gene-QYE76_064750, gene-QYE76_065670, gene-QYE76_065737, gene-QYE76_065999, gene-QYE76_066188, gene-QYE76_066665, gene-QYE76_066798, gene-QYE76_066804, gene-QYE76_067035, gene-QYE76_067238, gene-QYE76_067631, gene-QYE76_068338, gene-QYE76_068676, gene-QYE76_069688, gene-QYE76_070345, gene-QYE76_070759, gene-QYE76_071187, gene-QYE76_071387, gene-QYE76_071607, gene-QYE76_071853, gene-QYE76_071932