Basic Information
Locus ID:
gene-QYE76_056485
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 288539244 | 288548780 | - | gene-QYE76_056485 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 80,553.14 Da | 42.27 | 92.32 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 532 | 592 | 4.0E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 272 | 380 | 7.5E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 670 | 714 | 1.7E-4 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 529 | 593 | 4.04E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 154 | 405 | 1.15E-22 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 649 | 726 | 3.14E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 152 | 412 | 4.5E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 648 | 717 | 1.6E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 527 | 597 | 2.6E-10 | - |
| SMART | SM00358 | DRBM_3 | 528 | 593 | 2.2E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 249 | 391 | 1.8E-8 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 650 | 716 | 7.5E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 527 | 594 | 12.402353 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 649 | 717 | 11.795446 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 157 | 404 | 17.561783 | IPR004274 |
| Coils | Coil | Coil | 575 | 595 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_051226611.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Lolium perenne] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8R7TYL0 | protein-serine/threonine phosphatase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology