Basic Information
Locus ID:
gene-QYE76_056442
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 287324011 | 287330994 | - | gene-QYE76_056442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 106,557.01 Da | 54.44 | 80.73 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 525 | 680 | 4.35491E-47 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 142 | 232 | 2.3E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 520 | 706 | 2.89E-47 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 554 | 686 | 3.7E-41 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 73 | - | - |
| Coils | Coil | Coil | 903 | 923 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022861324.1 | uncharacterized protein LOC111381741 [Olea europaea var. sylvestris] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | Q946U3 | Reverse transcriptase (Fragment) OS=Avena sativa OX=4498 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |