Basic Information
Locus ID:
gene-QYE76_056188
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 279028384 | 279038622 | - | gene-QYE76_056188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.42 | 68,957.07 Da | 56.10 | 76.45 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 31 | 117 | 5.9E-6 | IPR002902 |
| Pfam | PF03634 | TCP family transcription factor | 557 | 629 | 1.1E-27 | IPR017887 |
| Gene3D | G3DSA:3.30.430.20 | - | 160 | 254 | 6.2E-7 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 27 | 119 | 2.9E-8 | IPR038408 |
| ProSiteProfiles | PS51369 | TCP domain profile. | 557 | 610 | 22.317034 | IPR017887 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 18 | 120 | 11.311049 | IPR002902 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 491 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69690.1 | TCP family transcription factor . | 0 |
| RefSeq | XP_051208078.1 | uncharacterized protein LOC127324011 isoform X2 [Lolium perenne] | 0 |
| Q9C9L2 | Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FQH1 | Gnk2-homologous domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | BH01.1925, BH01.1926, BH01.1953, BH01.1955, BH01.1965 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_2AG0111780, gene-QOZ80_2AG0111800 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0119700.1, HORVU.MOREX.r3.2HG0185770.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035744, gene-QYE76_056188 |
| Poaceae | Oryza coarctata | 1 | Oco05G010260 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g56840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G195400 |
| Poaceae | Puccinellia tenuiflora | 23 | Pt_Chr0200158, Pt_Chr0200181, Pt_Chr0301803, Pt_Chr0301818 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G001610 |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G287500, Tel2E01G674800, Tel2E01G674900 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG017710, gene_TRIDC2AG056830 ... |
| Poaceae | Triticum aestivum | 25 | TraesCS2A02G142100.1.cds1, TraesCS2A02G145100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27621 |