Basic Information
Locus ID:
gene-QYE76_056128
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 277255869 | 277265393 | + | gene-QYE76_056128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 138,557.58 Da | 51.49 | 73.37 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1094 | 1203 | 8.18014E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 524 | 844 | 3.28268E-81 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 543 | 922 | 9.4E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1092 | 1193 | 3.3E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 958 | 995 | 3.1E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 957 | 1007 | 4.57E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 853 | 1249 | 2.77E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 508 | 844 | 3.86E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 616 | 703 | 8.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 495 | 589 | 6.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 704 | 857 | 1.8E-27 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 971 | 1010 | 3.8E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1075 | 1244 | 2.0E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 859 | 970 | 3.1E-6 | IPR027417 |
| SMART | SM00490 | helicmild6 | 1110 | 1193 | 3.5E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 520 | 814 | 6.1E-26 | IPR014001 |
| SMART | SM00184 | ring_2 | 958 | 996 | 6.0E-5 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1082 | 1246 | 13.760478 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 598 | 806 | 12.715961 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 958 | 997 | 10.674659 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 973 | 982 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 381 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_051226210.1 | helicase-like transcription factor CHR28 isoform X1 [Lolium perenne] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FNZ9 | Helicase-like transcription factor CHR28 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology