Basic Information
Locus ID:
gene-QYE76_056053
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 274521432 | 274523877 | + | gene-QYE76_056053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 83,407.47 Da | 50.23 | 71.38 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 581 | 674 | 1.36848E-18 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 583 | 673 | 1.5E-10 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 67 | 157 | 7.2E-14 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 579 | 679 | 4.5E-16 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 565 | 702 | 3.8E-20 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 593 | 604 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 531 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051190174.1 | uncharacterized protein LOC127303488 [Lolium perenne] | 0 |
| TrEMBL | Q53KG9 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g25400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |