Basic Information
Locus ID:
gene-QYE76_055869
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 269480750 | 269488015 | - | gene-QYE76_055869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 98,915.21 Da | 42.32 | 87.40 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 376 | 452 | 1.63052E-5 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 574 | 692 | 2.70401E-55 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 76 | 166 | 1.9E-9 | IPR005162 |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 568 | 671 | 2.1E-33 | IPR041373 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 439 | 675 | 7.34E-73 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 358 | 503 | 2.0E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 506 | 579 | 8.6E-17 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 34 | - | - |
| Coils | Coil | Coil | 725 | 745 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2K7T5 | RT_RNaseH domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS31182 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |