Basic Information
Locus ID:
gene-QYE76_055717
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 264896632 | 264905512 | - | gene-QYE76_055717 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 124,967.33 Da | 47.51 | 89.66 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 775 | 893 | 2.93897E-56 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 744 | 842 | 6.2E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 107 | 197 | 3.0E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 638 | 884 | 3.91E-56 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 388 | 505 | 2.7E-5 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 629 | 761 | 5.0E-17 | - |
| Gene3D | G3DSA:3.10.20.370 | - | 769 | 843 | 9.6E-10 | - |
| Coils | Coil | Coil | 980 | 1000 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_030443636.1 | uncharacterized protein LOC115665966 [Syzygium oleosum] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A5E4GJT7 | RNA-directed DNA polymerase (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B023628 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |