Basic Information
Locus ID:
gene-QYE76_055654
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 262575142 | 262575480 | - | gene-QYE76_055654 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 12,365.80 Da | 45.60 | 127.14 | 0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 55 | 97 | 2.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 46 | 103 | 1.73E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 107 | 9.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 55 | 96 | 1.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 55 | 97 | 11.500827 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44578.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051221855.1 | probable E3 ubiquitin-protein ligase ATL44 [Lolium perenne] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | R7WFN9 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3710, BH02.3248, CH02.3997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038210, gene-QOZ80_1BG0088200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297780.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055654 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G319900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G027310 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G548500, Tel3E01G552500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049770, gene_TRIDC3BG056070 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G345400.1.cds1, TraesCS3B02G377500.1.cds1 ... |