Basic Information
Locus ID:
gene-QYE76_055502
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 257870590 | 257881230 | + | gene-QYE76_055502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 111,738.52 Da | 46.75 | 78.78 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 337 | 434 | 8.23889E-13 | - |
| CDD | cd01647 | RT_LTR | 579 | 735 | 1.11609E-48 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 333 | 442 | 4.06E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 575 | 761 | 2.33E-50 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 609 | 741 | 4.0E-41 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 318 | 459 | 7.2E-18 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 863 | 883 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027171437.1 | uncharacterized protein LOC113771004 [Coffea eugenioides] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | Q946U3 | Reverse transcriptase (Fragment) OS=Avena sativa OX=4498 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |