Basic Information
Locus ID:
gene-QYE76_055427
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 256161078 | 256164713 | + | gene-QYE76_055427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 28,354.33 Da | 49.53 | 75.96 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 40 | 87 | 1.4E-5 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 144 | 199 | 1.0E-7 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 202 | 4.59E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 89 | 2.26E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 208 | 1.2E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 95 | 1.5E-8 | IPR013083 |
| SMART | SM00744 | ringv_2 | 143 | 200 | 1.1E-10 | IPR011016 |
| SMART | SM00744 | ringv_2 | 39 | 91 | 1.9E-5 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 136 | 206 | 16.32091 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_051226863.1 | uncharacterized protein LOC127344597 isoform X1 [Lolium perenne] | 0 |
| TrEMBL | A0A8I6X364 | RING-CH-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology