Basic Information
Locus ID:
gene-QYE76_055164
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 248019803 | 248028933 | - | gene-QYE76_055164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 137,065.11 Da | 42.47 | 72.00 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 686 | 801 | 2.19412E-52 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 114 | 244 | 1.7E-15 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 324 | 480 | 1.64E-36 | IPR012337 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 284 | 314 | 1.38E-7 | IPR036875 |
| Gene3D | G3DSA:3.30.420.10 | - | 325 | 474 | 1.7E-29 | IPR036397 |
| Gene3D | G3DSA:4.10.60.10 | - | 262 | 324 | 8.2E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 294 | 310 | 0.0048 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 287 | 472 | 20.908785 | IPR001584 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 295 | 310 | 9.059338 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1066 | 1102 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047064419.1 | uncharacterized protein LOC124672191, partial [Lolium rigidum] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XWJ4 | Polyprotein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7937 |
| Amaranthaceae | Suaeda glauca | 21 | Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004270 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G04102, Ftri5G14832 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03974 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10413 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16920.v3.1 |