halophFGD

Basic Information

Locus ID: gene-QYE76_054813

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	237073187	237079563	+	gene-QYE76_054813

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.70	126,015.19 Da	46.63	81.63	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09279	RNase_HI_like	771	872	3.94837E-32	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	608	706	1.1E-21	IPR041577
Pfam	PF03732	Retrotransposon gag protein	89	179	6.7E-14	IPR005162
Pfam	PF13456	Reverse transcriptase-like	775	872	1.0E-11	IPR002156
SUPERFAMILY	SSF56672	DNA/RNA polymerases	534	736	4.0E-33	IPR043502
SUPERFAMILY	SSF53098	Ribonuclease H-like	850	976	1.07E-26	IPR012337
SUPERFAMILY	SSF53098	Ribonuclease H-like	770	874	3.79E-18	IPR012337
Gene3D	G3DSA:3.30.420.10	-	844	1005	1.9E-34	IPR036397
Gene3D	G3DSA:3.30.70.270	-	562	636	1.7E-9	IPR043128
ProSiteProfiles	PS50879	RNase H domain profile.	767	926	11.171929	IPR002156
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	803	970	16.303352	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	420	470	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_027343131.1	uncharacterized protein LOC113855699 [Abrus precatorius]	0
TrEMBL	Q10KH4	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g26704 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000027960
Poaceae	Lolium multiflorum	225	gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... gene-QYE76_000970, gene-QYE76_001268, gene-QYE76_001697, gene-QYE76_003222, gene-QYE76_003567, gene-QYE76_004089, gene-QYE76_004153, gene-QYE76_004233, gene-QYE76_004348, gene-QYE76_004432, gene-QYE76_004440, gene-QYE76_004789, gene-QYE76_005148, gene-QYE76_005269, gene-QYE76_005817, gene-QYE76_006870, gene-QYE76_007396, gene-QYE76_007635, gene-QYE76_008407, gene-QYE76_008759, gene-QYE76_008883, gene-QYE76_008941, gene-QYE76_010212, gene-QYE76_010567, gene-QYE76_010895, gene-QYE76_011012, gene-QYE76_011096, gene-QYE76_011097, gene-QYE76_011109, gene-QYE76_011743, gene-QYE76_013115, gene-QYE76_013278, gene-QYE76_013303, gene-QYE76_013629, gene-QYE76_013821, gene-QYE76_014108, gene-QYE76_014219, gene-QYE76_014480, gene-QYE76_014533, gene-QYE76_014620, gene-QYE76_014811, gene-QYE76_014919, gene-QYE76_015296, gene-QYE76_015559, gene-QYE76_015569, gene-QYE76_015677, gene-QYE76_016063, gene-QYE76_016567, gene-QYE76_017053, gene-QYE76_017231, gene-QYE76_017560, gene-QYE76_017723, gene-QYE76_018105, gene-QYE76_018232, gene-QYE76_018241, gene-QYE76_018720, gene-QYE76_018966, gene-QYE76_019059, gene-QYE76_019218, gene-QYE76_019290, gene-QYE76_020263, gene-QYE76_020469, gene-QYE76_020841, gene-QYE76_021352, gene-QYE76_021689, gene-QYE76_021724, gene-QYE76_021735, gene-QYE76_021898, gene-QYE76_022014, gene-QYE76_022483, gene-QYE76_022531, gene-QYE76_023270, gene-QYE76_023326, gene-QYE76_023406, gene-QYE76_023450, gene-QYE76_024385, gene-QYE76_024386, gene-QYE76_024562, gene-QYE76_024651, gene-QYE76_024687, gene-QYE76_025167, gene-QYE76_025745, gene-QYE76_025954, gene-QYE76_026175, gene-QYE76_026310, gene-QYE76_026479, gene-QYE76_026534, gene-QYE76_026563, gene-QYE76_026577, gene-QYE76_027137, gene-QYE76_027286, gene-QYE76_027909, gene-QYE76_027974, gene-QYE76_028709, gene-QYE76_028770, gene-QYE76_028799, gene-QYE76_028842, gene-QYE76_029059, gene-QYE76_029926, gene-QYE76_029971, gene-QYE76_030591, gene-QYE76_030846, gene-QYE76_030905, gene-QYE76_031136, gene-QYE76_031494, gene-QYE76_031782, gene-QYE76_032031, gene-QYE76_032125, gene-QYE76_033003, gene-QYE76_033654, gene-QYE76_033911, gene-QYE76_034294, gene-QYE76_034647, gene-QYE76_035286, gene-QYE76_036050, gene-QYE76_036235, gene-QYE76_036266, gene-QYE76_036296, gene-QYE76_036600, gene-QYE76_037097, gene-QYE76_037200, gene-QYE76_037403, gene-QYE76_037952, gene-QYE76_038117, gene-QYE76_039683, gene-QYE76_040905, gene-QYE76_041207, gene-QYE76_041280, gene-QYE76_041305, gene-QYE76_041838, gene-QYE76_041883, gene-QYE76_042099, gene-QYE76_042194, gene-QYE76_042379, gene-QYE76_042564, gene-QYE76_042586, gene-QYE76_042862, gene-QYE76_043216, gene-QYE76_043782, gene-QYE76_043902, gene-QYE76_043962, gene-QYE76_044086, gene-QYE76_044635, gene-QYE76_044672, gene-QYE76_045097, gene-QYE76_045722, gene-QYE76_046379, gene-QYE76_046416, gene-QYE76_046582, gene-QYE76_046741, gene-QYE76_046978, gene-QYE76_047299, gene-QYE76_047557, gene-QYE76_047774, gene-QYE76_047983, gene-QYE76_048542, gene-QYE76_048543, gene-QYE76_048634, gene-QYE76_048850, gene-QYE76_049109, gene-QYE76_049177, gene-QYE76_049534, gene-QYE76_050218, gene-QYE76_050488, gene-QYE76_050852, gene-QYE76_051210, gene-QYE76_051319, gene-QYE76_051438, gene-QYE76_051717, gene-QYE76_051853, gene-QYE76_051932, gene-QYE76_051946, gene-QYE76_051960, gene-QYE76_051970, gene-QYE76_052132, gene-QYE76_052133, gene-QYE76_052421, gene-QYE76_052989, gene-QYE76_053118, gene-QYE76_053600, gene-QYE76_054280, gene-QYE76_054813, gene-QYE76_055593, gene-QYE76_055687, gene-QYE76_056053, gene-QYE76_056908, gene-QYE76_057101, gene-QYE76_058359, gene-QYE76_058996, gene-QYE76_058997, gene-QYE76_059100, gene-QYE76_059364, gene-QYE76_059976, gene-QYE76_060594, gene-QYE76_061369, gene-QYE76_062302, gene-QYE76_063073, gene-QYE76_063326, gene-QYE76_063366, gene-QYE76_064053, gene-QYE76_064192, gene-QYE76_064357, gene-QYE76_064446, gene-QYE76_065008, gene-QYE76_065013, gene-QYE76_065229, gene-QYE76_065547, gene-QYE76_066521, gene-QYE76_066644, gene-QYE76_066707, gene-QYE76_066865, gene-QYE76_067239, gene-QYE76_068074, gene-QYE76_068075, gene-QYE76_069274, gene-QYE76_069520, gene-QYE76_069805, gene-QYE76_069839, gene-QYE76_069840, gene-QYE76_070942, gene-QYE76_071253, gene-QYE76_071286
Poaceae	Oryza sativa	1	ChrSy.fgenesh.mRNA.19
Poaceae	Sporobolus alterniflorus	3	Chr05G009620, Chr05G009630, Chr20G008400