Basic Information
Locus ID:
gene-QYE76_053643
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Uncharacterized protein K02A2.6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 195286699 | 195293822 | - | gene-QYE76_053643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 163,117.05 Da | 42.70 | 76.90 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 666 | 827 | 1.85328E-75 | - |
| CDD | cd00303 | retropepsin_like | 583 | 665 | 5.20793E-8 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 892 | 966 | 7.1E-15 | IPR041577 |
| Pfam | PF00665 | Integrase core domain | 1142 | 1238 | 2.7E-10 | IPR001584 |
| Pfam | PF17921 | Integrase zinc binding domain | 1075 | 1123 | 8.9E-8 | IPR041588 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 666 | 827 | 4.1E-22 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 666 | 965 | 4.56E-93 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1141 | 1304 | 1.07E-39 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1132 | 1326 | 3.2E-50 | IPR036397 |
| Gene3D | G3DSA:1.10.340.70 | - | 1032 | 1122 | 1.1E-12 | - |
| Gene3D | G3DSA:3.10.20.370 | - | 921 | 976 | 2.4E-5 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 574 | 673 | 1.5E-6 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 674 | 739 | 5.2E-14 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 837 | 920 | 7.4E-21 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 740 | 834 | 1.8E-27 | IPR043128 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1138 | 1298 | 23.331852 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 368 | - | - |
| Coils | Coil | Coil | 30 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050207440.1 | uncharacterized protein LOC126656861 [Mercurialis annua] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |