Basic Information
Locus ID:
gene-QYE76_053384
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ribonuclease H protein At1g65750
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 186150499 | 186160248 | - | gene-QYE76_053384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 239,341.61 Da | 52.08 | 77.41 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1239 | 1503 | 4.89342E-54 | - |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1765 | 1847 | 3.2E-19 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1246 | 1503 | 3.2E-37 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1181 | 1472 | 4.27E-20 | IPR043502 |
| Gene3D | G3DSA:4.10.60.10 | - | 402 | 489 | 7.7E-6 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1225 | 1503 | 17.731186 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2130 | 2159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 971 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43760.1 | DNAse I-like superfamily protein. | 0 |
| RefSeq | XP_051222216.1 | uncharacterized protein LOC127340513 [Lolium perenne] | 0 |
| O00370 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | 0 | |
| TrEMBL | Q53PH7 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g07520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_006358, gene-QYE76_016631, gene-QYE76_025777 ... |