Basic Information
Locus ID:
gene-QYE76_052921
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 165760320 | 165771529 | + | gene-QYE76_052921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 87,999.55 Da | 38.14 | 80.63 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 634 | 727 | 4.50031E-17 | - |
| Pfam | PF13650 | Aspartyl protease | 635 | 725 | 2.9E-5 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 37 | 134 | 2.9E-18 | IPR005162 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 211 | 248 | 3.35E-5 | IPR036875 |
| SUPERFAMILY | SSF50630 | Acid proteases | 631 | 735 | 1.01E-7 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 612 | 748 | 1.4E-24 | IPR021109 |
| SMART | SM00343 | c2hcfinal6 | 231 | 247 | 0.0061 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 232 | 247 | 9.42196 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 223 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_045089081.1 | uncharacterized protein LOC123497118 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A533HS20 | Retrotransposon gag domain-containing protein (Fragment) OS=Gemella sp. OX=1966354 GN=DI638_10665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 35 | gene-QYE76_002238, gene-QYE76_002580, gene-QYE76_006006 ... |