halophFGD

Basic Information

Locus ID: gene-QYE76_052903

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	164776479	164782298	+	gene-QYE76_052903

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.65	75,627.15 Da	40.87	80.93	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01647	RT_LTR	391	512	3.73165E-39	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	575	663	7.8E-12	IPR041577
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	409	501	3.5E-10	IPR000477
Pfam	PF03732	Retrotransposon gag protein	217	310	1.1E-12	IPR005162
SUPERFAMILY	SSF56672	DNA/RNA polymerases	409	664	2.0E-65	IPR043502
Gene3D	G3DSA:3.30.70.270	-	440	512	3.3E-25	IPR043128
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	408	439	3.3E-25	-
Gene3D	G3DSA:3.30.70.270	-	521	603	1.7E-18	IPR043128
MobiDBLite	mobidb-lite	consensus disorder prediction	1	57	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	83	102	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	13	30	-	-

Best hit

Source	Best Hit ID	Description
RefSeq	XP_024310613.1	uncharacterized protein LOC104584890 isoform X1 [Brachypodium distachyon]
Swiss-Prot	Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	Q2QU76	Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g17210 PE=4 SV=2

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	77	gene-QYE76_000700, gene-QYE76_000963, gene-QYE76_001054 ... gene-QYE76_002156, gene-QYE76_002421, gene-QYE76_002536, gene-QYE76_002674, gene-QYE76_002898, gene-QYE76_003810, gene-QYE76_009902, gene-QYE76_009972, gene-QYE76_010249, gene-QYE76_011923, gene-QYE76_012527, gene-QYE76_012573, gene-QYE76_012827, gene-QYE76_013933, gene-QYE76_015865, gene-QYE76_019560, gene-QYE76_021137, gene-QYE76_022857, gene-QYE76_024219, gene-QYE76_024421, gene-QYE76_024666, gene-QYE76_026189, gene-QYE76_026948, gene-QYE76_029594, gene-QYE76_029599, gene-QYE76_029788, gene-QYE76_029996, gene-QYE76_030140, gene-QYE76_031218, gene-QYE76_031311, gene-QYE76_032317, gene-QYE76_032628, gene-QYE76_032726, gene-QYE76_033624, gene-QYE76_035689, gene-QYE76_035710, gene-QYE76_037188, gene-QYE76_038975, gene-QYE76_039501, gene-QYE76_040156, gene-QYE76_040867, gene-QYE76_041475, gene-QYE76_041643, gene-QYE76_041929, gene-QYE76_042380, gene-QYE76_042624, gene-QYE76_042875, gene-QYE76_049733, gene-QYE76_050326, gene-QYE76_050427, gene-QYE76_050768, gene-QYE76_051136, gene-QYE76_051594, gene-QYE76_052903, gene-QYE76_053291, gene-QYE76_053376, gene-QYE76_054128, gene-QYE76_054129, gene-QYE76_054913, gene-QYE76_054957, gene-QYE76_054971, gene-QYE76_056154, gene-QYE76_056909, gene-QYE76_059498, gene-QYE76_060289, gene-QYE76_062070, gene-QYE76_062973, gene-QYE76_063559, gene-QYE76_064167, gene-QYE76_065044, gene-QYE76_066571, gene-QYE76_067098, gene-QYE76_068891, gene-QYE76_069645