Basic Information
Locus ID:
gene-QYE76_052853
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 162384465 | 162391686 | + | gene-QYE76_052853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 57,213.09 Da | 51.70 | 78.69 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 337 | 511 | 1.77119E-103 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 335 | 440 | 2.1E-16 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 12 | 108 | 1.6E-10 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 25 | 122 | 7.98E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 337 | 466 | 3.14E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 138 | 1.5E-26 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 324 | 513 | 2.1E-71 | - |
| SMART | SM00232 | pad1_6 | 336 | 464 | 2.9E-12 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 336 | 467 | 25.328644 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 143 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_051209868.1 | AMSH-like ubiquitin thioesterase 3 isoform X4 [Lolium perenne] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6EGY9 | MPN domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology