Basic Information
Locus ID:
gene-QYE76_052658
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Plant transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 155504251 | 155509686 | + | gene-QYE76_052658 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 56,800.91 Da | 43.84 | 76.09 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 264 | 394 | 1.9E-16 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 435 | 464 | 5.23E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 411 | 476 | 8.8E-7 | - |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 445 | 460 | 8.548371 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 429 | - | - |
| Coils | Coil | Coil | 375 | 395 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G13770.1 | 0 | |
| RefSeq | XP_051199985.1 | uncharacterized protein LOC127313537 [Lolium perenne] | 0 |
| TrEMBL | A0A453I8F0 | CCHC-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah030472 |
| Poaceae | Lolium multiflorum | 226 | gene-QYE76_000514, gene-QYE76_000718, gene-QYE76_000828 ... |