Basic Information
Locus ID:
gene-QYE76_052421
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 146901407 | 146903649 | + | gene-QYE76_052421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 41,491.34 Da | 37.34 | 86.49 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 197 | 289 | 1.70635E-18 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 12 | 103 | 1.1E-16 | IPR005162 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 198 | 288 | 2.7E-8 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 194 | 294 | 5.2E-14 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 181 | 318 | 3.0E-19 | IPR021109 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039838949.1 | uncharacterized protein LOC120699143 isoform X1 [Panicum virgatum] | 0 |
| TrEMBL | A0A2T7F6G9 | Peptidase A2 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G207500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |