Basic Information
Locus ID:
gene-QYE76_052334
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 143189385 | 143193548 | - | gene-QYE76_052334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 106,038.61 Da | 40.95 | 73.08 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 924 | 970 | 8.64541E-23 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 113 | 247 | 1.1E-17 | - |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 48 | 86 | 1.1E-5 | IPR029472 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 594 | 836 | 4.8E-67 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 594 | 966 | 1.07E-30 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_051201939.1 | uncharacterized protein LOC127315493 [Lolium perenne] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | Q94LQ7 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g40800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 25 | gene-QYE76_002067, gene-QYE76_002068, gene-QYE76_008283 ... |