Basic Information
Locus ID:
gene-QYE76_052034
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 131983573 | 131993673 | + | gene-QYE76_052034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 113,034.09 Da | 48.84 | 66.89 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 691 | 739 | 4.1E-8 | IPR013103 |
| Pfam | PF00098 | Zinc knuckle | 561 | 577 | 1.1E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 844 | 978 | 7.4E-20 | - |
| Pfam | PF00646 | F-box domain | 22 | 66 | 1.0E-6 | IPR001810 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 548 | 583 | 7.48E-7 | IPR036875 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 88 | 2.09E-14 | IPR036047 |
| Gene3D | G3DSA:4.10.60.10 | - | 555 | 606 | 3.1E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 68 | 7.7E-7 | - |
| SMART | SM00256 | fbox_2 | 25 | 69 | 0.0041 | IPR001810 |
| SMART | SM00343 | c2hcfinal6 | 561 | 577 | 0.0011 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 562 | 577 | 9.603271 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 555 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051222497.1 | uncharacterized protein LOC127340792 isoform X2 [Lolium perenne] | 0 |
| TrEMBL | Q8LN71 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0091N21.45 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1953 |
| Poaceae | Lolium multiflorum | 59 | gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... |