halophFGD

Basic Information

Locus ID: gene-QYE76_051983

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	129968402	129986290	+	gene-QYE76_051983

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.45	213,001.89 Da	43.36	78.47	-0.57

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	522	602	3.07009E-17	-
CDD	cd01647	RT_LTR	714	779	4.08594E-24	-
CDD	cd09274	RNase_HI_RT_Ty3	1568	1686	1.39188E-56	-
Pfam	PF00098	Zinc knuckle	422	438	0.0023	IPR001878
Pfam	PF03732	Retrotransposon gag protein	861	951	1.0E-9	IPR005162
Pfam	PF03732	Retrotransposon gag protein	264	360	2.6E-18	IPR005162
Pfam	PF17917	RNase H-like domain found in reverse transcriptase	1562	1665	1.4E-33	IPR041373
Pfam	PF08284	Retroviral aspartyl protease	493	620	2.8E-28	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	404	439	6.16E-9	IPR036875
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1341	1669	1.11E-87	IPR043502
SUPERFAMILY	SSF56672	DNA/RNA polymerases	654	779	7.0E-39	IPR043502
SUPERFAMILY	SSF50630	Acid proteases	511	610	1.09E-12	IPR021109
Gene3D	G3DSA:4.10.60.10	-	383	444	4.3E-10	-
Gene3D	G3DSA:2.40.70.10	Acid Proteases	496	626	4.2E-18	IPR021109
Gene3D	G3DSA:3.30.70.270	-	1500	1572	2.4E-16	IPR043128
Gene3D	G3DSA:3.30.70.270	-	1407	1497	3.7E-22	IPR043128
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	1344	1406	2.8E-11	-
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	675	754	1.7E-35	-
Gene3D	G3DSA:3.30.70.270	-	755	779	1.7E-35	IPR043128
SMART	SM00343	c2hcfinal6	422	438	7.9E-4	IPR001878
SMART	SM00343	c2hcfinal6	404	418	0.5	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	423	438	10.476859	IPR001878
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	523	534	-	IPR001969
MobiDBLite	mobidb-lite	consensus disorder prediction	1846	1867	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	789	808	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	146	173	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1850	1867	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	146	162	-	-
Coils	Coil	Coil	178	198	-	-
Coils	Coil	Coil	141	163	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004190 (aspartic-type endopeptidase activity) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_048538050.1	uncharacterized protein LOC125516778, partial [Triticum urartu]
Swiss-Prot	Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	A0A6D2K8B4	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS31353 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	258	gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... gene-QYE76_001478, gene-QYE76_001545, gene-QYE76_002878, gene-QYE76_003070, gene-QYE76_003084, gene-QYE76_003260, gene-QYE76_003380, gene-QYE76_003557, gene-QYE76_004014, gene-QYE76_004489, gene-QYE76_004871, gene-QYE76_004955, gene-QYE76_005436, gene-QYE76_005535, gene-QYE76_006201, gene-QYE76_006461, gene-QYE76_007007, gene-QYE76_007524, gene-QYE76_008725, gene-QYE76_009080, gene-QYE76_009098, gene-QYE76_009266, gene-QYE76_009363, gene-QYE76_010359, gene-QYE76_010437, gene-QYE76_010499, gene-QYE76_010706, gene-QYE76_010790, gene-QYE76_011006, gene-QYE76_011217, gene-QYE76_011560, gene-QYE76_011586, gene-QYE76_011908, gene-QYE76_012104, gene-QYE76_012416, gene-QYE76_012553, gene-QYE76_013102, gene-QYE76_013636, gene-QYE76_013925, gene-QYE76_014160, gene-QYE76_014218, gene-QYE76_014483, gene-QYE76_014893, gene-QYE76_015012, gene-QYE76_015132, gene-QYE76_015133, gene-QYE76_015203, gene-QYE76_015348, gene-QYE76_015925, gene-QYE76_016314, gene-QYE76_017256, gene-QYE76_018005, gene-QYE76_019073, gene-QYE76_019212, gene-QYE76_019540, gene-QYE76_019587, gene-QYE76_020032, gene-QYE76_020289, gene-QYE76_020547, gene-QYE76_020587, gene-QYE76_020642, gene-QYE76_020651, gene-QYE76_021191, gene-QYE76_021230, gene-QYE76_021549, gene-QYE76_021567, gene-QYE76_021633, gene-QYE76_021832, gene-QYE76_021874, gene-QYE76_022015, gene-QYE76_022057, gene-QYE76_022455, gene-QYE76_022481, gene-QYE76_022541, gene-QYE76_022729, gene-QYE76_022734, gene-QYE76_023212, gene-QYE76_023623, gene-QYE76_023684, gene-QYE76_024107, gene-QYE76_024266, gene-QYE76_024285, gene-QYE76_024368, gene-QYE76_024822, gene-QYE76_024853, gene-QYE76_025082, gene-QYE76_025194, gene-QYE76_025201, gene-QYE76_025558, gene-QYE76_025749, gene-QYE76_027306, gene-QYE76_027479, gene-QYE76_027767, gene-QYE76_027929, gene-QYE76_028306, gene-QYE76_028390, gene-QYE76_028521, gene-QYE76_028627, gene-QYE76_028964, gene-QYE76_029066, gene-QYE76_029253, gene-QYE76_029478, gene-QYE76_029656, gene-QYE76_030047, gene-QYE76_030722, gene-QYE76_030778, gene-QYE76_031152, gene-QYE76_031278, gene-QYE76_031378, gene-QYE76_031418, gene-QYE76_031427, gene-QYE76_031826, gene-QYE76_031863, gene-QYE76_031938, gene-QYE76_032150, gene-QYE76_032272, gene-QYE76_032316, gene-QYE76_032418, gene-QYE76_032799, gene-QYE76_033152, gene-QYE76_033241, gene-QYE76_033522, gene-QYE76_033748, gene-QYE76_034058, gene-QYE76_034449, gene-QYE76_034686, gene-QYE76_034857, gene-QYE76_034978, gene-QYE76_035931, gene-QYE76_035959, gene-QYE76_036628, gene-QYE76_036652, gene-QYE76_037020, gene-QYE76_037135, gene-QYE76_037340, gene-QYE76_037578, gene-QYE76_037745, gene-QYE76_038116, gene-QYE76_038164, gene-QYE76_038172, gene-QYE76_038439, gene-QYE76_038746, gene-QYE76_038763, gene-QYE76_039113, gene-QYE76_040376, gene-QYE76_040465, gene-QYE76_040941, gene-QYE76_041166, gene-QYE76_041319, gene-QYE76_041326, gene-QYE76_041533, gene-QYE76_041618, gene-QYE76_041892, gene-QYE76_041914, gene-QYE76_042072, gene-QYE76_042207, gene-QYE76_042261, gene-QYE76_042491, gene-QYE76_042607, gene-QYE76_042863, gene-QYE76_043045, gene-QYE76_043118, gene-QYE76_043255, gene-QYE76_043288, gene-QYE76_043315, gene-QYE76_043743, gene-QYE76_043904, gene-QYE76_044146, gene-QYE76_044579, gene-QYE76_045336, gene-QYE76_045350, gene-QYE76_045894, gene-QYE76_046083, gene-QYE76_046575, gene-QYE76_047804, gene-QYE76_048450, gene-QYE76_048520, gene-QYE76_048594, gene-QYE76_049456, gene-QYE76_049700, gene-QYE76_049754, gene-QYE76_049810, gene-QYE76_050300, gene-QYE76_050661, gene-QYE76_050837, gene-QYE76_050875, gene-QYE76_050894, gene-QYE76_051097, gene-QYE76_051315, gene-QYE76_051537, gene-QYE76_051884, gene-QYE76_051931, gene-QYE76_051983, gene-QYE76_052387, gene-QYE76_052481, gene-QYE76_052552, gene-QYE76_053300, gene-QYE76_053742, gene-QYE76_054326, gene-QYE76_054387, gene-QYE76_054432, gene-QYE76_055160, gene-QYE76_055429, gene-QYE76_055502, gene-QYE76_055554, gene-QYE76_055717, gene-QYE76_055869, gene-QYE76_056285, gene-QYE76_056306, gene-QYE76_056551, gene-QYE76_057276, gene-QYE76_057462, gene-QYE76_057713, gene-QYE76_058024, gene-QYE76_058417, gene-QYE76_058456, gene-QYE76_058589, gene-QYE76_058992, gene-QYE76_059365, gene-QYE76_059726, gene-QYE76_061144, gene-QYE76_061584, gene-QYE76_062064, gene-QYE76_062079, gene-QYE76_063015, gene-QYE76_063103, gene-QYE76_063472, gene-QYE76_063549, gene-QYE76_063820, gene-QYE76_063894, gene-QYE76_064004, gene-QYE76_064014, gene-QYE76_064184, gene-QYE76_064452, gene-QYE76_064982, gene-QYE76_065099, gene-QYE76_065510, gene-QYE76_065556, gene-QYE76_065773, gene-QYE76_066087, gene-QYE76_066525, gene-QYE76_066734, gene-QYE76_066943, gene-QYE76_067024, gene-QYE76_067129, gene-QYE76_067595, gene-QYE76_067894, gene-QYE76_068030, gene-QYE76_068152, gene-QYE76_068235, gene-QYE76_068869, gene-QYE76_068889, gene-QYE76_069814, gene-QYE76_071652, gene-QYE76_071655