Basic Information
Locus ID:
gene-QYE76_051960
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 129120587 | 129128199 | + | gene-QYE76_051960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 146,646.95 Da | 45.33 | 73.91 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1120 | 1213 | 9.97648E-19 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 1121 | 1212 | 9.9E-10 | - |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 333 | 370 | 5.5E-5 | IPR005174 |
| Pfam | PF03732 | Retrotransposon gag protein | 539 | 630 | 1.3E-15 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 1118 | 1218 | 7.64E-16 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1104 | 1241 | 9.0E-20 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 1132 | 1143 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 1000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051190174.1 | uncharacterized protein LOC127303488 [Lolium perenne] | 0 |
| TrEMBL | A0A2T8HZN5 | Peptidase A2 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G001000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |