Basic Information
Locus ID:
gene-QYE76_051946
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 128476886 | 128480137 | - | gene-QYE76_051946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 114,886.96 Da | 45.80 | 71.74 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 825 | 918 | 4.03123E-16 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 311 | 402 | 9.3E-16 | IPR005162 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 826 | 917 | 1.5E-8 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 823 | 923 | 5.63E-15 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 809 | 946 | 6.6E-18 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 837 | 848 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 608 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |