halophFGD

Basic Information

Locus ID: gene-QYE76_051501

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	110966092	110978426	+	gene-QYE76_051501

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.04	263,346.72 Da	41.82	81.98	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	464	548	4.81966E-15	-
CDD	cd01647	RT_LTR	725	901	5.43802E-90	-
CDD	cd00303	retropepsin_like	1755	1852	9.46959E-13	-
Pfam	PF00098	Zinc knuckle	376	391	1.2E-4	IPR001878
Pfam	PF03732	Retrotransposon gag protein	1455	1545	1.2E-8	IPR005162
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	741	900	1.1E-33	IPR000477
Pfam	PF17921	Integrase zinc binding domain	1097	1153	1.3E-18	IPR041588
Pfam	PF03732	Retrotransposon gag protein	177	275	1.0E-16	IPR005162
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	964	1049	7.7E-27	IPR041577
SUPERFAMILY	SSF56672	DNA/RNA polymerases	2022	2084	1.33E-11	IPR043502
SUPERFAMILY	SSF56672	DNA/RNA polymerases	664	1048	2.78E-154	IPR043502
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	367	393	6.8E-7	IPR036875
SUPERFAMILY	SSF53098	Ribonuclease H-like	1158	1254	3.64E-22	IPR012337
SUPERFAMILY	SSF50630	Acid proteases	1751	1860	1.78E-5	IPR021109
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	686	826	2.0E-92	-
Gene3D	G3DSA:2.40.70.10	Acid Proteases	1736	1876	2.9E-18	IPR021109
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	2013	2140	3.8E-16	-
Gene3D	G3DSA:3.30.420.10	-	1141	1293	6.2E-32	IPR036397
Gene3D	G3DSA:3.30.70.270	-	911	995	4.4E-30	IPR043128
Gene3D	G3DSA:2.40.70.10	Acid Proteases	461	577	1.0E-9	IPR021109
Gene3D	G3DSA:3.30.70.270	-	766	901	2.0E-92	IPR043128
Gene3D	G3DSA:4.10.60.10	-	349	395	7.0E-6	-
SMART	SM00343	c2hcfinal6	375	391	0.001	IPR001878
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1067	1254	13.479116	IPR001584
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	722	901	14.328351	IPR000477
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	376	391	10.097754	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	326	367	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	123	138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	304	367	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2290	2309	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	87	140	-	-
Coils	Coil	Coil	2191	2211	-	-
Coils	Coil	Coil	68	88	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_044428442.1	uncharacterized protein LOC123153336 [Triticum aestivum]
Swiss-Prot	P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
TrEMBL	A4K7M3	RNA-directed DNA polymerase OS=Oryza sativa subsp. japonica OX=39947 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	203	gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... gene-QYE76_001923, gene-QYE76_002013, gene-QYE76_002313, gene-QYE76_002482, gene-QYE76_002497, gene-QYE76_002538, gene-QYE76_002715, gene-QYE76_003008, gene-QYE76_003118, gene-QYE76_003166, gene-QYE76_003486, gene-QYE76_003766, gene-QYE76_004082, gene-QYE76_004566, gene-QYE76_004715, gene-QYE76_005068, gene-QYE76_005221, gene-QYE76_005504, gene-QYE76_005835, gene-QYE76_006810, gene-QYE76_007854, gene-QYE76_009754, gene-QYE76_009817, gene-QYE76_010620, gene-QYE76_010780, gene-QYE76_010949, gene-QYE76_010963, gene-QYE76_011002, gene-QYE76_011280, gene-QYE76_011417, gene-QYE76_011674, gene-QYE76_011687, gene-QYE76_011775, gene-QYE76_011922, gene-QYE76_012139, gene-QYE76_012197, gene-QYE76_012685, gene-QYE76_012755, gene-QYE76_012837, gene-QYE76_012896, gene-QYE76_013414, gene-QYE76_013929, gene-QYE76_015291, gene-QYE76_015790, gene-QYE76_016556, gene-QYE76_018973, gene-QYE76_019606, gene-QYE76_019931, gene-QYE76_020219, gene-QYE76_020338, gene-QYE76_020444, gene-QYE76_020842, gene-QYE76_021728, gene-QYE76_022036, gene-QYE76_022222, gene-QYE76_022805, gene-QYE76_023384, gene-QYE76_023460, gene-QYE76_023851, gene-QYE76_024192, gene-QYE76_024664, gene-QYE76_025680, gene-QYE76_025943, gene-QYE76_026121, gene-QYE76_026131, gene-QYE76_026203, gene-QYE76_027608, gene-QYE76_027648, gene-QYE76_028543, gene-QYE76_028760, gene-QYE76_028853, gene-QYE76_028945, gene-QYE76_028992, gene-QYE76_030015, gene-QYE76_030141, gene-QYE76_030388, gene-QYE76_030643, gene-QYE76_030956, gene-QYE76_030974, gene-QYE76_031328, gene-QYE76_031331, gene-QYE76_031372, gene-QYE76_031650, gene-QYE76_031744, gene-QYE76_031800, gene-QYE76_031856, gene-QYE76_031950, gene-QYE76_032322, gene-QYE76_032583, gene-QYE76_032754, gene-QYE76_032931, gene-QYE76_033132, gene-QYE76_033183, gene-QYE76_033188, gene-QYE76_034352, gene-QYE76_034498, gene-QYE76_034740, gene-QYE76_035694, gene-QYE76_035780, gene-QYE76_036777, gene-QYE76_037456, gene-QYE76_037509, gene-QYE76_038394, gene-QYE76_038683, gene-QYE76_039093, gene-QYE76_039775, gene-QYE76_039940, gene-QYE76_040362, gene-QYE76_041075, gene-QYE76_041290, gene-QYE76_041315, gene-QYE76_041401, gene-QYE76_041430, gene-QYE76_041864, gene-QYE76_041956, gene-QYE76_042418, gene-QYE76_042656, gene-QYE76_042737, gene-QYE76_042766, gene-QYE76_043249, gene-QYE76_043593, gene-QYE76_043638, gene-QYE76_043655, gene-QYE76_043783, gene-QYE76_044233, gene-QYE76_044264, gene-QYE76_044330, gene-QYE76_044615, gene-QYE76_044685, gene-QYE76_044765, gene-QYE76_044855, gene-QYE76_045312, gene-QYE76_045646, gene-QYE76_045677, gene-QYE76_045706, gene-QYE76_046425, gene-QYE76_047698, gene-QYE76_048773, gene-QYE76_049187, gene-QYE76_049253, gene-QYE76_049578, gene-QYE76_049726, gene-QYE76_050465, gene-QYE76_050825, gene-QYE76_050890, gene-QYE76_050997, gene-QYE76_051044, gene-QYE76_051161, gene-QYE76_051501, gene-QYE76_051563, gene-QYE76_051686, gene-QYE76_051925, gene-QYE76_051993, gene-QYE76_052082, gene-QYE76_052241, gene-QYE76_052691, gene-QYE76_053008, gene-QYE76_053090, gene-QYE76_053100, gene-QYE76_053119, gene-QYE76_053410, gene-QYE76_053455, gene-QYE76_053686, gene-QYE76_054059, gene-QYE76_054828, gene-QYE76_054911, gene-QYE76_055188, gene-QYE76_055605, gene-QYE76_055788, gene-QYE76_056442, gene-QYE76_056905, gene-QYE76_057167, gene-QYE76_057448, gene-QYE76_057829, gene-QYE76_058616, gene-QYE76_059518, gene-QYE76_059829, gene-QYE76_061157, gene-QYE76_061968, gene-QYE76_064162, gene-QYE76_064314, gene-QYE76_064397, gene-QYE76_064465, gene-QYE76_064788, gene-QYE76_064901, gene-QYE76_065325, gene-QYE76_065474, gene-QYE76_065724, gene-QYE76_065747, gene-QYE76_065818, gene-QYE76_067269, gene-QYE76_067697, gene-QYE76_068411, gene-QYE76_068996, gene-QYE76_069069, gene-QYE76_069196, gene-QYE76_069510, gene-QYE76_069646, gene-QYE76_070251, gene-QYE76_070568