Basic Information
Locus ID:
gene-QYE76_051361
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 105819169 | 105824146 | + | gene-QYE76_051361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 96,300.50 Da | 44.55 | 85.88 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 722 | 815 | 3.77823E-16 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 157 | 289 | 4.2E-11 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 719 | 823 | 1.73E-7 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 700 | 836 | 7.5E-24 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 69 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_045089081.1 | uncharacterized protein LOC123497118 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A533HS20 | Retrotransposon gag domain-containing protein (Fragment) OS=Gemella sp. OX=1966354 GN=DI638_10665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 35 | gene-QYE76_002238, gene-QYE76_002580, gene-QYE76_006006 ... |