Basic Information
Locus ID:
gene-QYE76_051277
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 102717932 | 102725504 | - | gene-QYE76_051277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 76,890.40 Da | 52.29 | 76.36 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 595 | 680 | 2.43569E-6 | IPR003340 |
| CDD | cd16461 | RING-H2_EL5_like | 203 | 233 | 1.50064E-14 | - |
| Pfam | PF13639 | Ring finger domain | 191 | 234 | 9.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 245 | 1.71E-19 | - |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 594 | 684 | 4.9E-9 | IPR015300 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 238 | 6.4E-21 | IPR013083 |
| Gene3D | G3DSA:2.40.330.10 | - | 594 | 690 | 1.2E-6 | IPR015300 |
| SMART | SM00184 | ring_2 | 192 | 233 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 234 | 12.1057 | IPR001841 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 594 | 690 | 8.55744 | IPR003340 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 250 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051190431.1 | uncharacterized protein LOC127303766 [Lolium perenne] | 0 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 0 | |
| TrEMBL | F2EDL4 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14179 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108710.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 32 | gene-QYE76_000433, gene-QYE76_009952, gene-QYE76_009956 ... |