Basic Information
Locus ID:
gene-QYE76_051130
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 95994704 | 96000628 | - | gene-QYE76_051130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 93,124.11 Da | 53.65 | 71.36 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12438 | RRM_CNOT4 | 114 | 209 | 2.2614E-43 | IPR034261 |
| CDD | cd16618 | mRING-HC-C4C4_CNOT4 | 9 | 58 | 9.09297E-23 | IPR039515 |
| Pfam | PF14570 | RING/Ubox like zinc-binding domain | 9 | 60 | 3.4E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 72 | 2.5E-13 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 117 | 215 | 4.84E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 120 | 198 | 7.8E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 94 | 1.8E-20 | IPR013083 |
| SMART | SM00361 | rrm2_1 | 120 | 198 | 1.3E-11 | IPR003954 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 9 | 57 | 9.184606 | IPR001841 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 119 | 202 | 10.957128 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 383 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45630.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_047058784.1 | uncharacterized protein LOC124665415 [Lolium rigidum] | 0 |
| O95628 | CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6ECJ7 | CCR4-NOT transcription complex subunit 4 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.235, BH02.242, CH02.249 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051130 |
| Poaceae | Oryza coarctata | 1 | Oco02G004820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205133, Pt_Chr0205183 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028050, Chr05G005750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G256800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018050, gene_TRIDC3BG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G133600.1, TraesCS3B02G165900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120310_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7259 |