Basic Information
Locus ID:
gene-QYE76_050488
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73871904 | 73874702 | + | gene-QYE76_050488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 91,977.52 Da | 50.01 | 68.47 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 653 | 787 | 7.43667E-58 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 670 | 787 | 1.8E-11 | IPR000477 |
| Pfam | PF03732 | Retrotransposon gag protein | 78 | 166 | 2.0E-6 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 613 | 787 | 7.0E-61 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 614 | 757 | 2.7E-50 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 695 | 787 | 2.7E-50 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 468 | - | - |
| Coils | Coil | Coil | 795 | 795 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051190174.1 | uncharacterized protein LOC127303488 [Lolium perenne] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | Q53MN4 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g18810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |