Basic Information
Locus ID:
gene-QYE76_050198
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 63383073 | 63386964 | - | gene-QYE76_050198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 44,960.21 Da | 50.31 | 78.42 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 119 | 402 | 2.92774E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 154 | 6.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 275 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 315 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 117 | 406 | 4.03E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 238 | 413 | 3.9E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 237 | 1.2E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 238 | 275 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 403 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 315 | 5.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 231 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 1.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 163 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 122 | 159 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 278 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 284 | 14.017362 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 262 | 276 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 141 | 155 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 302 | 316 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 4.7E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_051223371.1 | zinc finger CCCH domain-containing protein 17-like [Lolium perenne] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EFP1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology