halophFGD

Basic Information

Locus ID: gene-QYE76_050084

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	59377753	59384986	-	gene-QYE76_050084

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.49	74,333.04 Da	40.27	78.06	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00098	Zinc knuckle	244	259	1.5E-7	IPR001878
Pfam	PF13639	Ring finger domain	18	63	1.3E-9	IPR001841
Pfam	PF14223	gag-polypeptide of LTR copia-type	72	191	3.6E-18	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	233	267	8.2E-9	IPR036875
SUPERFAMILY	SSF57850	RING/U-box	15	69	7.83E-15	-
Gene3D	G3DSA:4.10.60.10	-	236	269	3.9E-8	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	10	76	8.2E-15	IPR013083
SMART	SM00343	c2hcfinal6	243	259	1.6E-5	IPR001878
SMART	SM00184	ring_2	19	62	1.9E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	19	63	12.636808	IPR001841
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	244	259	11.119688	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	189	219	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	197	219	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_020167872.1	uncharacterized protein LOC109753372 [Aegilops tauschii subsp. strangulata]	0
TrEMBL	Q8W5P6	Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0001K12.23 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg49723
Asteraceae	Flaveria trinervia	3	Ftri16G33087, Ftri3G20908, Ftri8G30898
Poaceae	Lolium multiflorum	72	gene-QYE76_001045, gene-QYE76_002921, gene-QYE76_003125 ... gene-QYE76_003340, gene-QYE76_003915, gene-QYE76_003917, gene-QYE76_004923, gene-QYE76_005585, gene-QYE76_006139, gene-QYE76_006605, gene-QYE76_007873, gene-QYE76_008436, gene-QYE76_010084, gene-QYE76_011520, gene-QYE76_011953, gene-QYE76_012207, gene-QYE76_013020, gene-QYE76_013261, gene-QYE76_013644, gene-QYE76_014200, gene-QYE76_015017, gene-QYE76_022095, gene-QYE76_024919, gene-QYE76_025426, gene-QYE76_026897, gene-QYE76_027380, gene-QYE76_030158, gene-QYE76_030810, gene-QYE76_031198, gene-QYE76_031694, gene-QYE76_033544, gene-QYE76_034396, gene-QYE76_036129, gene-QYE76_036893, gene-QYE76_037055, gene-QYE76_037924, gene-QYE76_038468, gene-QYE76_039022, gene-QYE76_039134, gene-QYE76_043377, gene-QYE76_044275, gene-QYE76_048695, gene-QYE76_048902, gene-QYE76_049180, gene-QYE76_049287, gene-QYE76_049337, gene-QYE76_049648, gene-QYE76_050084, gene-QYE76_050146, gene-QYE76_050801, gene-QYE76_053034, gene-QYE76_057171, gene-QYE76_057271, gene-QYE76_057605, gene-QYE76_058294, gene-QYE76_058619, gene-QYE76_059435, gene-QYE76_060735, gene-QYE76_061320, gene-QYE76_061490, gene-QYE76_062413, gene-QYE76_063597, gene-QYE76_064028, gene-QYE76_064528, gene-QYE76_066514, gene-QYE76_066629, gene-QYE76_067159, gene-QYE76_067840, gene-QYE76_069241, gene-QYE76_069442, gene-QYE76_069523, gene-QYE76_069648